Downloads

Software

Download the latest release of Prequips from the project management system at Sourceforge.net. Packages are available for Mac OS X, Windows and Linux.

To make things less complicated we are currently providing only a single distribution that contains all plug-ins.

Please note that the pepXML and protXML data providers currently delivered with Prequips only read pepXML v18 and protXML v3 files. We are working on an update of the data providers in order to be able to process the latest releases of the pepXML and protXML file format.

Sample Data

• Prequips Sample Data Set (~ 5 GB). This data set consists of 3 experiments, two of which are mock treatments (mock1, mock2) and one is a perturbation experiment with a chemical agent (perturbed). Each experiment contains 4 mzXML files as well as a pepXML file (interact-nogroup_norm.xml) and a protXML (interact-nogroup_norm-prot.xml) file. Downloading one of the 3 experiments is sufficient to try out Prequips.
• Inclusion List Sample Data Set (80 MB). Contains 1 mzXML file in centroid mode for the mapping runs, 1 mzXML file in centroid mode for the inclusion list runs, the corresponding peptide (and protein) identification in BioWorks tabular file format and the Superhirn (MASTER_RUN) file containing the list of detected features in the mapping runs. (Originally the mapping runs comprised 3 files and the inclusion list runs 5 files.)

Source Code

The Prequips source code is available from the SVN at Sourceforge.net.